No. It doesn’t fork, patch, or modify Claude Code in any way.
The actual mechanism
Each instance is a shell wrapper script (batch file on Windows) that does two things: set CLAUDE_CONFIG_DIR to the instance’s directory, then exec the real claude binary. Simplified:
That’s it. No proxy, no monkey-patching, no background process. Claude Code reads its config from the pointed-to directory instead of ~/.claude, and everything else, flags, commands, keybindings, works exactly as it does normally.
Why this matters in practice
When Claude Code ships an update, you get it immediately. There’s nothing to rebase or merge. Every feature works because you’re running the actual binary. And each instance is a real directory you can cd into, inspect, or delete with standard tools.
What’s inside an instance directory
~/.claude-multi/deepseek/
├── settings.json # provider env vars + merged settings